A List of Episode-Related Fanfiction
 
Season 5

Spoilers for future episodes are mentioned in brackets, spoilers for past episodes aren't.

Stories with a * next to them were added on 27th June 2014.

Search and Rescue Outsiders
The Seed Inquisition
Broken Ties The Prodigal
The Daedalus Variations Remnants
Ghost in the Machine Brain Storm
The Shrine Infection
Whispers Identity
The Queen Vegas
Tracker Enemy at the Gate
First Contact
 Links
The Lost Tribe

Search and Rescue
Five Reasons for Claustrophobia by Leesa Perrie 
Reflections by Leesa Perrie
Unexpected Delivery by Leesa Perrie (set a short while later)
A Thousand Words by deltacephei
Untitled by kisahawklin
Sweet Dreams by skinscript
The Reason by skinscript
The Guy by cookiemom6067
Revised Diagnosis by alipeeps
Strong by Helen W/wneleh
So Much Trouble by sheafrotherdon
Post Rescue – The Recovery by Titan5
Perfectly Everything by jewel_of_athos
Special Cargo by negolith
Search and Rescue Tag by negolith
Recognition by luvsciencegeeks
A Matter of Command by Eildon Rhymer/rhymer23
Requisite Items by liketheriver
Quick Fix by Alleonh
Never Alone by jennytork
Unto Us by drufan
Search and Rescue, Missing Scene by ltcoljsheppard
A Single Voice by padawan_aneiki
Of Rescues and Injuries by seramercury
The Convenient Comforter by reen212000
Four Names Teyla Considered, and One She Chose by cat_77
Birth by x_varda_x (just this chapter)
Previously On… by ladyflowdi (comic book)
Untitled Fic by friendshipper/sholio
Epiphanies by friendshipper/sholio
John Sheppard: pretty, pretty princess or the Dorothy Gale of Atlantis? by teenygozer (ficlet #7)
The Wild Blue Yonder by busaikko
The Daily Grind by kristen999
Many Different Suns by Rustler

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The Seed
Being the Guy by liketheriver
Shouldn’t Come As A Surprise by dr_dredd
Grow Up to Your Ruin by alipeeps
Get Well Present by kisahawklin
Feed the Beast by deltacephei
Seeds of Fear by skinscript
Delicate Interlude by erda_3
Say, Wasn't This In 'Slither'? by Negolith
Uncomfortably Numb by Negolith
Relapse by kriadydragon/stealth dragon
Santayana’s Assertion by radioshack84
Only In Pegasus by seramercury
Fire and Ice by padawan_aneiki

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Broken Ties
Broken Memories by Leesa Perrie
What About Everything by deltacephei
A Transient Memory by skinscript
Not Starsky by Helen W (wneleh)
Know Thyself for What Thou Art by X-parrot
The Handoff by kisahawklin
Forgiveness Unbidden by sheafrotherdon
The Gift of Life by Flossy
In Memoriam by jadesfire2808
Identity Crisis by wildcat88/frisco
The Road to Hell by wildcat88
Surprise!!! by Alleonh (prelude/episode-inspired)
Know Thyself for What Thou Art by X-parrot
Above by padawan_aneiki
Compulsion by Kristen999
Fear of the Dark, by rheanna27 and astridv (comic book)
Proper Hatred by x_erikah_x (AU missing scene/tag)
One is a Lonely Number by annieb1955
Rule Number Four by kriadydragon
Coherent sources by roo1965
Not Infallible, Still Heroic by altyronsmaker
Tribute by stella_pegasi

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The Daedalus Variations
Menace of Eternity by skinscript
Perspective by skinscript
The Daedalus Ascension by skinscript
How the Other Half Lives by kisahawklin
Taking Home the A Team by Helen W/wneleh
Timing is Everything by Ellex
The Others by reen212000
Missing scene: The Daedalus Variations by reen212000
Playing the Game by liketheriver
In Your Shoes by Alleonh (dark)
Quantum Lament by Negolith
The Best Things Left Behind by padawan_aneiki
Reverse Variants by jennytork (AU)
Purpose by wildcat88/frisco
Team Commander Teyla Emmagan Variation by don_in_melb (AU of episode)

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Ghost in the Machine
Poker Face by kisahawklin
Transforming Water by deltacephei
Erratic Impulses by cookiemom6067 
Duality by Tielan
No Easy Answers by Tielan
What a World by Helen W/wneleh
Break by LinziDay
Rest for the Weary by LinziDay (just this chapter)
The Space Between by padawan_aneiki
Grace by writerjc
Would Have by seramercury
Goodbye To Yesterdays by coolbreeze1
Ghost in the Mind by azure-horizon
Report by angelqueen04
In Twos by maddie_amber
Never by tenacious_err
Bone China by egalitarianmuse

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The Shrine
The Shrine Tag by Jayne Perry
Colours Seen by Candlelight by friendshipper/sholio
Shrine Tag by friendshipper/sholio
While Waiting on the Gate by Helen W/wneleh
Excerpt from The Physician of Pegasus: The Autobiography of Jennifer Keller by Helen W/wneleh
Metaphor by skinscript
Advance Directive by kisahawklin
The Threat of a Lullaby by liketheriver
Day 10 by badwolf36
All the Myriad Faces byX-parrot
Icy Waters by Kythe
A Little Slice of Pi by babs
Difficulties in Mathematics by jadesfire2808
Token of Appreciation by wildcat88/frisco (prelude)
Never Say Goodbye by Eildon Rhymer/rhymer23
Goodbye by Barcardicider
Wondering and Worrying by Barcardicider
Hover by linziday
Reasons by aries_taurus
Of Friends and Reassurances by seramercury
Letters From an Alternate Life by seramercury
A Woman Clothed in Strength by pwcorgigirl
Life’s Little Curveballs by sgafan
Where? by x_varda_x
Signal to Noise by lovethesnark (Gen, but with passing references to Rodney’s feelings for Jennifer)
Shredding Paper by lovethesnark (kHo)
Every True Genius is Bound to be Naive by hajimebassaidai (starts pre-Atlantis, ends as a tag to The Shrine)

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Whispers
Shadow Boxing by coolbreeze1 
Circumnavigation by kisahawklin 
Tell Me What You See by deltacephei
Revelations and Second Impressions by Negolith
Orientation by elementalv
Resurfacing Memories by seramercury
Missing Scene by mapsandlegends
Bad Guys Need Killin' by stella_pegasi

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The Queen
Skin Deep by deltacephei
Bounce by skinscript
Predator and Prey by sfnutter
Hunger by kisahawklin
All Who Follow by padawan_aneiki
Cracked, Not Bruised by seramercury
Regina by ms_jvh_shuh
Monarchy by Era Yachi (AU tag)

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Tracker
Weight and Measure by Helen W (wneleh)
Post Mortem by facetofcathy
In Good Hands by seramercury
Squishy Insides by x_varda_x

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First Contact
Reluctant by kisahawklin
Talk Amongst Yourselves by deltacephei
Missing in Action by skinscript

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The Lost Tribe
Just Another Sleepless Night by sgaazmy (mention of Ronon and Rodney’s interest in Jennifer, but the focus of the fic is friendship)
Journey to the Center by Padawan_aneiki 
An Unexpected Direction by skinscript
Untitled by kisahawklin
Six Reunions by Helen W/wneleh
The View from the Other Side by Eildon Rhymer/rhymer23
Missed One by seramercury
Reflection by ticiathethief

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Outsiders
This Time by kisahawklin
Bros Before 'Hos by liketheriver
A Twice-told Tale by Eildon Rhymer/rhymer23
Truth That Sticks by drufan
First Do No Harm by Padawan_aneiki
Of Alien Rivers and Uncooperative Colonels by seramercury
A Good Man by Tipper
Aftermath by stella_pegasi

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Inquisition
A Case for the Defence by cookiemom6067
Better Off by deltacephei
Make New Friends by erda_3
Whiskey and Water by facetofcathy
An Even Worse Ending by Helen W (wneleh)
Sprawl by kisahawklin
Marching Away and Softly Gone, Men in Stiff Procession by vain_glorious (AU)
Whiskey and Water by facetofcathy

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The Prodigal
Cars by Leesa Perrie
Bad Scary Noisy Soft Warm by cookiemom6067
Cars by linziday
Like Bad Wallpaper by Drufan 
L.A.B.A.T.Y.D. (Supervillains Excluded) by deltacephei
For the Sake of One by Padawan_aneiki 
Other Worlds by liketheriver
Justified by Helen W (wneleh)
The Days After by Titan5
The Prodigal's Revenge by x_varda_x (just this chapter)
Twitfic by liketheriver (sort of episode-related, ish)

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Remnants
Still There by badwolf36
Hard Eight by liketheriver
Just A Little Freakout by Helen W/wneleh
Untitled by kisahawklin
Can't Touch This by cookiemom6067
Phantom Pains by Padawan_aneiki
Even the Best Fall Down Sometimes by quiet_december (AU)
Sleeplessness=Not So Great Dreams by seramercury
A Matter of Mortality by casus17
Through the Looking Glass by kristen999

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Brain Storm
The Mice Will Play by kisahawklin (states it is slash but reads as gen to me)
Wolf in Sheep's Clothing by Tzzz
Roughing It by kriadydragon/stealth dragon
Attack of the Not So Killer Flu Bug by seramercury
A Hair’s Breadth by Negolith (sort of episode related, occurs on Atlantis while Rodney is on his way back from Earth)

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Infection
Infection Tag: Rescue by kriadydragon/stealth dragon
Infection Tag: Rude Awakening by kriadydragon/stealth dragon
Remembrance by kisahawklin 
Quid Pro Quo by cookiemom6067
Breaking Point by skinscript 
Ethnocentric by erda_3
Crossing the Bridge by reen212000
Stray Bullets by seramercury
A Wraith's Guide to Food and Nutrition by Eildon Rhymer/rhymer23 (crack!fic)
Crash Landing by x_Varda_x (some brief mentions of McKay/Keller)
Losses by mjulok (not a tag as such, set a few days later)

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Identity
Wrong by deltacephei (Gen, but with hints of McKay/Keller and Ronon/Amelia)
Partners by erda_3 
Those Who Can't Teach by Helen W (wneleh)
Observations by kisahawklin
Light Conversation by seramercury

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Vegas
Not all of these fics are happy endings, though most are
Escape Velocity by dogeared and aesc (words and artwork)
Dead in the Desert by liketheriver
Existence Qualified by drufan
As It Is by drufan (character death)
Untitled Vegas Tag by Negolith
Baptism by cookiemom6067
In This World by wihluta
Solitary Man by skinscript
Sympathy for the Devil by Kristen999
Paying His Dues by ltcoljsheppard
The Las Vegas Crazies by rubygirl
Finally - A Vegas Coda by JiM_
Face to Face by Eildon Rhymer/rhymer23 (character death)
Parallel Lives by Eildon Rhymer/rhymer23
Never Win by donutsweeper (SGA/Las Vegas crossover)
Just a Moment by donutsweeper (Leverage/Stargate Atlantis crossover)
Defiance by Gloria Mundi/viva_gloria
Et in Atlantis ego by ladyoflisquill
Vegas Coda by lunabee34 (character death)
The Way It Should Have Been by Padawan_aneiki
He Didn't Wake Up Dead by seramercury
Next Offramp by kriadydragon/stealth dragon
John Sheppard was Dying (Part 1), Rodney McKay was Dying (Part 2), John Sheppard was Dying (Part 3) and Rodney McKay was Dying (Final Part) by Tangled up in Blu
Devil's In the House of the Rising Sun by Sian1359 (sort of a death fic)
After Vegas by shipper scifi
Like a Silver Chain, Entwined by friendshipper/sholio (character deaths; kind of dark)
Lonely Man of Faith, I Said in my Haste: All Men are Liars and While the Candle Still Burns by hasida (spoilers for Enemy at the Gate in sequels - WIP)
The Ascension of John Sheppard by zooropa (character death)
Grow Your Wings by to be revealed (Vega Verse, episode tag)
Destiny by lorr54

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Enemy at the Gate
I have not included Virtual Season 6 stories in this section, nor stories that occur more than a few weeks (or so) after the end of the episode. There is a gen Virtual Season 6 series here if you're interested.
Regroup and Recover by friendshipper/sholio (Gen, but brief mention of Rodney/Jennifer and Ronon/Jennifer)
Tea and Candy by friendshipper/sholio (mention of McKeller in passing, some minor undercurrents of Teyla/Rodney)
Tag Alongs by deltacephei
The Sum of its Parts by deltacephei
Kaleidoscope by Rivestra
3 Discussions by skinscript
Pomp and Circumstance by wildcat88/frisco
Aliens in the Bay by jennytork
Shake, Rattle, and Roll by seramercury
Strangest Day by Kartano
Health to the Company by Khriskin
Starting Over (In the Same Place) by pogrebin
TwitFic by liketheriver 
Respect by tigerlilybrown
End of the World by penknife
Stealing Away Home by welfycat
Orpheus Rising by everybetty
Just a Thought by lilyfarfalla
*The Best Man by WriterJC
*Write Her Name in the Sky by ladysorka
*The Rusty Wire Gives by michelel72 (Apoca!Fic set after this episode)

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